Giovanni Carosso, PhD

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About

I love to tinker and build things, watch them do work that existing toolsets couldn’t tackle. In medicine, molecular engineering can launch total modality shifts – from chemicals to biologics, then siRNAs and antisense, then gene editing – creating real unlocks of biological control. We’ve become better and better at hitting these technological inflection points, of late pushing faster than ever with serious computational tailwinds, yet we remain essentially stagnated when it comes to which targets need hitting in the first place. But this is a bio, not an op-ed, so more on that later.

Giovanni Carosso

For the better part of a decade I’ve been a high-throughput molecular engineer, designing and running highly parallel synthetic biology pipelines to discover peptide bits and protein bobs that mute or unmute target genes. The goal is epigenetic editors able to conduct the orchestra of gene expression, smoothing out rough notes that cause disease, and do so more safely than is possible with ‘conventional’ gene editing systems like CRISPR-Cas9, base editing, or gene replacement therapy. By editing the epigenome, we fine-tune the genetic program without cutting or damaging the DNA.

At Epicrispr Biotechnologies, I led proteomic screening and engineering campaigns, key elements of the modality platform that underlies EPI-321, a silencer now in First-in-Human trials for facioscapulohumeral muscular dystrophy, and EPI-331, a durable gene activator heading toward Duchenne. Then as Founding Head of Research at General Control, I led a team accelerating that primitive to generate best-in-class epigenetic editors against a handful of cardiometabolic, muscular, and longevity-related targets, by installing the power of gene modulation into safer and more widely tolerable vehicles of drug delivery amenable to larger patient populations and multiplexed targeting. Because the commonest diseases of aging are multifactorial, the ability to precisely modulate multiple genes in parallel is a distinct therapeutic advantage.

Reflected in the gold visor of an astronaut helmet

Prior to the Bay's biotech scene, I earned a PhD in Human Genetics at Johns Hopkins School of Medicine. Early on I was awarded a NASA grant to study epigenetic effects of spaceflight on ISS astronauts. My thesis centered on Mendelian disorders of chromatin machinery, where genetic mutations in epigenetic regulators disrupt human development across many bodily systems. The focus was a histone methyltransferase protein and its role in neural stem cell development, discovering aberrant mechanisms of oxygen-sensing as a key driver of that disease. A UCSF postdoctoral fellowship followed, integrating genome-scale, multi-omics datasets into a machine-learning classifier to decipher the roles of protein-coding versus long non-coding RNA genes in neuronal differentiation – but shortly into that I followed the call to industry.

Outside of these, I'm a road-trip aficionado and extreme-temperature connoisseur, and pursue a passionate affection for diving at depth – with, and especially without, air – as a means to deeply connect with physiology and its relation to the mind. Freediving is a small sport that profoundly influences our conception of biological limits and how to surpass them.

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More about me

Consumer genetic profiling gives us ancestry in proportions, estimated against reference panels. I wanted to see the history behind those percentages: when, where, and how these populations took shape. Haplogroup labels offer a way into that history through published estimates of common-ancestor dates and geographic distributions. Underneath my “35.6% Southern European” result, there’s a paternal lineage shared across the Balkans and southern Italy, and a maternal branch linked to post-glacial expansion from southwestern Europe. My 10.8% Ashkenazi estimate adds another population history, with research pointing to a role for Jewish communities in Italy. This brings the dates, geography, and proportions together. You can explore your own results with deep-ancestry.

deep-ancestry · genotyped 2011, revisited 2026
♀ H3* maternal · mtDNA♂ E-V13 paternal · Y100% European · estimated composition79th percentile Neanderthal
Now

My results: 23andMe and deep-ancestry. Population context: Achilli 2004 · Sankararaman 2012 · Costa 2013 · Sarno 2014 · Carmi 2014.

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The longer history

100k 50k 20k 10k 5k 2k 1k 500 200 100 years before present · log scale 35.6% 28.5% 20.9% 10.8% NOW NEANDERTHAL ADMIXTURE ~55,000 y MY MATERNAL BRANCH: H3 11,000 ± 1,400 y E-V13 IN SOUTHERN ITALY 2,354 ± 832 y MATERNAL LINEAGES AND ASHKENAZI HISTORY ~2,000 y THE ASHKENAZI FOUNDER EVENT 25–32 generations
Five population-history estimates, admixture and founder events, followed by the composition estimate. Select an event marker for details and sources.
NEANDERTHAL ADMIXTURE · ~55,000 years agoc. 53,000 BCE · study estimate: 47,000–65,000 years agoThe oldest layer here comes from encounters with Neanderthals. Sankararaman et al. estimated the most likely timing of Neanderthal gene flow into ancestors of present-day Europeans at 47,000–65,000 years ago. My report places me above 79% of 23andMe customers for the Neanderthal variants it counts. That is a customer ranking, not the percentage of my DNA inherited from Neanderthals.
MY MATERNAL BRANCH: H3 · 11,000 ± 1,400 years agoc. 9000 BCE · estimated common ancestorMy mitochondrial result places my direct maternal line in H3. Achilli et al. estimated its common ancestor at 11,000 ± 1,400 years ago and proposed an expansion from the Franco-Cantabrian refuge: northern Spain and southwestern France. In their samples, H3 appears in 13.9% of Spanish Basques, 8.5% of Sardinians and 8.3% of Galicians. That gives this branch a geographic context; it leaves most of my family tree out of view.
E-V13 IN SOUTHERN ITALY · 2,354 ± 832 years agoc. 4th century BCE · estimated common ancestor in the study sampleMy reported paternal lineage, E-V13, connects this view to the Balkans and southern Italy. Sarno et al. found it in 9.5% of their Sicilian and southern Italian sample and estimated a common ancestor 2,354 ± 832 years ago. The estimate describes the sampled lineages. It cannot tell me when my own paternal ancestors arrived in Italy.
MATERNAL LINEAGES AND ASHKENAZI HISTORY · ~2,000 years agoc. 1st century CE · proposed historical contextH3 also appears in Ashkenazi maternal ancestry. Costa et al. reported that H accounts for 23% of Ashkenazi maternal lineages; 39% of the H mitogenomes they examined belong to H1 or H3. Their reconstruction proposes a role for European women, including in Mediterranean communities, in the formation of Ashkenazi ancestry. H3 alone cannot connect my maternal line to that history.
THE ASHKENAZI FOUNDER EVENT · 25–32 generations agoc. 11th–13th centuries CE · assuming 30 years per generationA population bottleneck leaves a long genetic afterlife. Carmi et al. inferred an Ashkenazi bottleneck 25–32 generations ago, followed by rapid growth. At 30 years per generation, that is roughly 750–960 years. This history helps explain the shared DNA segments seen in the population. My 10.8% Ashkenazi Jewish result is a separate composition estimate from 23andMe.

Composition, reported paternal haplogroup and Neanderthal ranking: 23andMe (v3 array, 2011; phased and imputed r6 output, 2026). Maternal H3: deep-ancestry analysis of the raw file; the supplied analysis reports 6776 T>C and excludes 17 tested subclades without assigning a finer branch. H3* here means no finer branch was assigned from these data. Nomenclature: PhyloTree mtDNA build 17. H3 age and sample frequencies: Achilli et al., Am J Hum Genet 75:910–918 (2004), doi:10.1086/425590. Neanderthal gene-flow timing: Sankararaman et al., PLoS Genet 8:e1002947 (2012), doi:10.1371/journal.pgen.1002947. Ashkenazi maternal-lineage history: Costa et al., Nat Commun 4:2543 (2013), doi:10.1038/ncomms3543. E-V13 sample frequency and estimated common ancestor: Sarno et al., PLoS ONE 9:e96074 (2014), doi:10.1371/journal.pone.0096074. Ashkenazi bottleneck estimate: Carmi et al., Nat Commun 5:4835 (2014), doi:10.1038/ncomms5835. Dates use the cited studies' estimates and assumptions; calendar equivalents are approximate.